/* join - join lines of two files on a common field Copyright (C) 1991, 1995 Free Software Foundation, Inc. This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA. Written by Mike Haertel, mike@gnu.ai.mit.edu. */ #include /* Get isblank from GNU libc. */ #define _GNU_SOURCE #include #include #include #include "system.h" #include "version.h" #include "long-options.h" #include "error.h" char *xmalloc (); char *xrealloc (); static void usage (); #define min(A, B) ((A) < (B) ? (A) : (B)) #define max(A, B) ((A) > (B) ? (A) : (B)) /* An element of the list describing the format of each output line. */ struct outlist { int file; /* File to take field from (1 or 2). */ int field; /* Field number to print. */ struct outlist *next; }; /* A field of a line. */ struct field { const char *beg; /* First character in field. */ size_t len; /* The length of the field. */ }; /* A line read from an input file. Newlines are not stored. */ struct line { char *beg; /* First character in line. */ char *lim; /* Character after last character in line. */ int nfields; /* Number of elements in `fields'. */ int nfields_allocated; /* Number of elements in `fields'. */ struct field *fields; }; /* One or more consecutive lines read from a file that all have the same join field value. */ struct seq { int count; /* Elements used in `lines'. */ int alloc; /* Elements allocated in `lines'. */ struct line *lines; }; /* The name this program was run with. */ char *program_name; /* If nonzero, print unpairable lines in file 1 or 2. */ static int print_unpairables_1, print_unpairables_2; /* If nonzero, print pairable lines. */ static int print_pairables; /* Empty output field filler. */ static char *empty_filler; /* Field to join on. */ static int join_field_1, join_field_2; /* List of fields to print. */ static struct outlist *outlist; /* Last element in `outlist', where a new element can be added. */ static struct outlist *outlist_end; /* Tab character separating fields; if this is NUL fields are separated by any nonempty string of white space, otherwise by exactly one tab character. */ static char tab; /* When using getopt_long_only, no long option can start with a character that is a short option. */ static struct option const longopts[] = { {"j", required_argument, NULL, 'j'}, {"j1", required_argument, NULL, '1'}, {"j2", required_argument, NULL, '2'}, {NULL, 0, NULL, 0} }; /* Used to print non-joining lines */ static struct line blank1; static struct line blank2; static void ADD_FIELD (struct line *line, const char *field, size_t len) { if (line->nfields >= line->nfields_allocated) { line->nfields_allocated = (3 * line->nfields_allocated) / 2 + 1; line->fields = (struct field *) xrealloc ((char *) line->fields, (line->nfields_allocated * sizeof (struct field))); } line->fields[line->nfields].beg = field; line->fields[line->nfields].len = len; ++(line->nfields); } /* Fill in the `fields' structure in LINE. */ static void xfields (line) struct line *line; { int i; register char *ptr, *lim; ptr = line->beg; lim = line->lim; for (i = 0; ptr < lim; ++i) { if (tab) { char *beg; beg = ptr; while (ptr < lim && *ptr != tab) ++ptr; ADD_FIELD (line, beg, ptr - beg); if (ptr < lim) ++ptr; } else { char *beg; beg = ptr; while (ptr < lim && !ISSPACE (*ptr)) ++ptr; ADD_FIELD (line, beg, ptr - beg); while (ptr < lim && ISSPACE (*ptr)) ++ptr; } } if (ptr > line->beg && ((tab && ISSPACE (ptr[-1])) || ptr[-1] == tab)) { /* Add one more (empty) field because the last character of the line was a delimiter. */ ADD_FIELD (line, NULL, 0); } } /* Read a line from FP into LINE and split it into fields. Return 0 if EOF, 1 otherwise. */ static int get_line (fp, line) FILE *fp; struct line *line; { static int linesize = 80; int c, i; char *ptr; if (feof (fp)) return 0; ptr = xmalloc (linesize); for (i = 0; (c = getc (fp)) != EOF && c != '\n'; ++i) { if (i == linesize) { linesize *= 2; ptr = xrealloc (ptr, linesize); } ptr[i] = c; } if (c == EOF && i == 0) { free (ptr); return 0; } line->beg = ptr; line->lim = line->beg + i; line->nfields_allocated = 0; line->nfields = 0; line->fields = NULL; xfields (line); return 1; } static void freeline (line) struct line *line; { free ((char *) line->fields); free (line->beg); } static void initseq (seq) struct seq *seq; { seq->count = 0; seq->alloc = 1; seq->lines = (struct line *) xmalloc (seq->alloc * sizeof (struct line)); } /* Read a line from FP and add it to SEQ. Return 0 if EOF, 1 otherwise. */ static int getseq (fp, seq) FILE *fp; struct seq *seq; { if (seq->count == seq->alloc) { seq->alloc *= 2; seq->lines = (struct line *) xrealloc ((char *) seq->lines, seq->alloc * sizeof (struct line)); } if (get_line (fp, &seq->lines[seq->count])) { ++seq->count; return 1; } return 0; } static void delseq (seq) struct seq *seq; { free ((char *) seq->lines); } /* Return <0 if the join field in LINE1 compares less than the one in LINE2; >0 if it compares greater; 0 if it compares equal. */ static int keycmp (line1, line2) struct line *line1; struct line *line2; { const char *beg1, *beg2; /* Start of field to compare in each file. */ int len1, len2; /* Length of fields to compare. */ int diff; if (join_field_1 < line1->nfields) { beg1 = line1->fields[join_field_1].beg; len1 = line1->fields[join_field_1].len; } else { beg1 = NULL; len1 = 0; } if (join_field_2 < line2->nfields) { beg2 = line2->fields[join_field_2].beg; len2 = line2->fields[join_field_2].len; } else { beg2 = NULL; len2 = 0; } if (len1 == 0) return len2 == 0 ? 0 : -1; if (len2 == 0) return 1; diff = memcmp (beg1, beg2, min (len1, len2)); if (diff) return diff; return len1 - len2; } /* Print field N of LINE if it exists and is nonempty, otherwise `empty_filler' if it is nonempty. */ static void prfield (n, line) int n; struct line *line; { int len; if (n < line->nfields) { len = line->fields[n].len; if (len) fwrite (line->fields[n].beg, 1, len, stdout); else if (empty_filler) fputs (empty_filler, stdout); } else if (empty_filler) fputs (empty_filler, stdout); } /* Print LINE, with its fields separated by `tab'. */ static void prline (line) struct line *line; { int i; for (i = 0; i < line->nfields; ++i) { prfield (i, line); if (i == line->nfields - 1) putchar ('\n'); else putchar (tab ? tab : ' '); } } /* Print the join of LINE1 and LINE2. */ static void prjoin (line1, line2) struct line *line1; struct line *line2; { if (outlist) { struct outlist *o; prfield (outlist->field - 1, outlist->file == 1 ? line1 : line2); for (o = outlist->next; o; o = o->next) { putchar (tab ? tab : ' '); prfield (o->field - 1, o->file == 1 ? line1 : line2); } putchar ('\n'); } else { int i; prfield (join_field_1, line1); for (i = 0; i < join_field_1 && i < line1->nfields; ++i) { putchar (tab ? tab : ' '); prfield (i, line1); } for (i = join_field_1 + 1; i < line1->nfields; ++i) { putchar (tab ? tab : ' '); prfield (i, line1); } for (i = 0; i < join_field_2 && i < line2->nfields; ++i) { putchar (tab ? tab : ' '); prfield (i, line2); } for (i = join_field_2 + 1; i < line2->nfields; ++i) { putchar (tab ? tab : ' '); prfield (i, line2); } putchar ('\n'); } } /* Print the join of the files in FP1 and FP2. */ static void join (fp1, fp2) FILE *fp1; FILE *fp2; { struct seq seq1, seq2; struct line line; int diff, i, j, eof1, eof2; /* Read the first line of each file. */ initseq (&seq1); getseq (fp1, &seq1); initseq (&seq2); getseq (fp2, &seq2); while (seq1.count && seq2.count) { diff = keycmp (&seq1.lines[0], &seq2.lines[0]); if (diff < 0) { if (print_unpairables_1) prline (&seq1.lines[0]); freeline (&seq1.lines[0]); seq1.count = 0; getseq (fp1, &seq1); continue; } if (diff > 0) { if (print_unpairables_2) prline (&seq2.lines[0]); freeline (&seq2.lines[0]); seq2.count = 0; getseq (fp2, &seq2); continue; } /* Keep reading lines from file1 as long as they continue to match the current line from file2. */ eof1 = 0; do if (!getseq (fp1, &seq1)) { eof1 = 1; ++seq1.count; break; } while (!keycmp (&seq1.lines[seq1.count - 1], &seq2.lines[0])); /* Keep reading lines from file2 as long as they continue to match the current line from file1. */ eof2 = 0; do if (!getseq (fp2, &seq2)) { eof2 = 1; ++seq2.count; break; } while (!keycmp (&seq1.lines[0], &seq2.lines[seq2.count - 1])); if (print_pairables) { for (i = 0; i < seq1.count - 1; ++i) for (j = 0; j < seq2.count - 1; ++j) prjoin (&seq1.lines[i], &seq2.lines[j]); } for (i = 0; i < seq1.count - 1; ++i) freeline (&seq1.lines[i]); if (!eof1) { seq1.lines[0] = seq1.lines[seq1.count - 1]; seq1.count = 1; } else seq1.count = 0; for (i = 0; i < seq2.count - 1; ++i) freeline (&seq2.lines[i]); if (!eof2) { seq2.lines[0] = seq2.lines[seq2.count - 1]; seq2.count = 1; } else seq2.count = 0; } if (print_unpairables_1 && seq1.count) { prline (&seq1.lines[0]); freeline (&seq1.lines[0]); while (get_line (fp1, &line)) { prline (&line); freeline (&line); } } if (print_unpairables_2 && seq2.count) { prline (&seq2.lines[0]); freeline (&seq2.lines[0]); while (get_line (fp2, &line)) { prline (&line); freeline (&line); } } delseq (&seq1); delseq (&seq2); } /* Add a field spec for field FIELD of file FILE to `outlist' and return 1, unless either argument is invalid; then just return 0. */ static int add_field (file, field) int file; int field; { struct outlist *o; if (file < 1 || file > 2 || field < 1) return 0; o = (struct outlist *) xmalloc (sizeof (struct outlist)); o->file = file; o->field = field; o->next = NULL; /* Add to the end of the list so the fields are in the right order. */ if (outlist == NULL) outlist = o; else outlist_end->next = o; outlist_end = o; return 1; } /* Add the comma or blank separated field spec(s) in STR to `outlist'. Return the number of fields added. */ static int add_field_list (str) char *str; { int added = 0; int file = -1, field = -1; int dot_found = 0; for (; *str; str++) { if (*str == ',' || ISBLANK (*str)) { added += add_field (file, field); switch (file) { case 1: blank1.nfields = max (blank1.nfields, field); break; case 2: blank2.nfields = max (blank2.nfields, field); break; } file = field = -1; dot_found = 0; } else if (*str == '.') dot_found = 1; else if (ISDIGIT (*str)) { if (!dot_found) { if (file == -1) file = 0; file = file * 10 + *str - '0'; } else { if (field == -1) field = 0; field = field * 10 + *str - '0'; } } else return 0; } added += add_field (file, field); return added; } /* Create a blank line with COUNT fields separated by tabs. */ void make_blank (blank, count) struct line *blank; int count; { int i; blank->beg = xmalloc (blank->nfields + 1); blank->fields = (struct field *) xmalloc (sizeof (struct field) * count); for (i = 0; i < blank->nfields; i++) { blank->beg[i] = '\t'; blank->fields[i].beg = &blank->beg[i]; blank->fields[i].len = 0; } blank->beg[i] = '\0'; blank->lim = &blank->beg[i]; } void main (argc, argv) int argc; char *argv[]; { char *names[2]; FILE *fp1, *fp2; int optc, prev_optc = 0, nfiles, val; blank1.nfields = 1; blank2.nfields = 1; program_name = argv[0]; parse_long_options (argc, argv, "join", version_string, usage); /* Now that we've seen the options, we can construct the blank line structures. */ make_blank (&blank1, blank1.nfields); make_blank (&blank2, blank2.nfields); nfiles = 0; print_pairables = 1; while ((optc = getopt_long_only (argc, argv, "-a:e:1:2:o:t:v:", longopts, (int *) 0)) != EOF) { switch (optc) { case 0: break; case 'a': val = atoi (optarg); if (val == 1) print_unpairables_1 = 1; else if (val == 2) print_unpairables_2 = 1; else error (2, 0, "invalid file number for `-a'"); break; case 'e': empty_filler = optarg; break; case '1': val = atoi (optarg); if (val <= 0) error (2, 0, "invalid field number for `-1'"); join_field_1 = val - 1; break; case '2': val = atoi (optarg); if (val <= 0) error (2, 0, "invalid field number for `-2'"); join_field_2 = val - 1; break; case 'j': val = atoi (optarg); if (val <= 0) error (2, 0, "invalid field number for `-j'"); join_field_1 = join_field_2 = val - 1; break; case 'o': if (add_field_list (optarg) == 0) error (2, 0, "invalid field list for `-o'"); break; case 't': tab = *optarg; break; case 'v': val = atoi (optarg); if (val == 1) print_unpairables_1 = 1; else if (val == 2) print_unpairables_2 = 1; else error (2, 0, "invalid file number for `-v'"); print_pairables = 0; break; case 1: /* Non-option argument. */ if (prev_optc == 'o') { /* Might be continuation of args to -o. */ if (add_field_list (optarg) > 0) continue; /* Don't change `prev_optc'. */ } if (nfiles > 1) usage (1); names[nfiles++] = optarg; break; case '?': usage (1); } prev_optc = optc; } if (nfiles != 2) usage (1); fp1 = strcmp (names[0], "-") ? fopen (names[0], "r") : stdin; if (!fp1) error (1, errno, "%s", names[0]); fp2 = strcmp (names[1], "-") ? fopen (names[1], "r") : stdin; if (!fp2) error (1, errno, "%s", names[1]); if (fp1 == fp2) error (1, errno, "both files cannot be standard input"); join (fp1, fp2); if ((fp1 == stdin || fp2 == stdin) && fclose (stdin) == EOF) error (1, errno, "-"); if (ferror (stdout) || fclose (stdout) == EOF) error (1, errno, "write error"); exit (0); } static void usage (status) int status; { if (status != 0) fprintf (stderr, "Try `%s --help' for more information.\n", program_name); else { printf ("\ Usage: %s [OPTION]... FILE1 FILE2\n\ ", program_name); printf ("\ \n\ -a SIDE print unpairable lines coming from file SIDE\n\ -e EMPTY replace missing input fields with EMPTY\n\ -j FIELD join on this FIELD for both files\n\ -[j]SIDE FIELD join on this FIELD for file SIDE\n\ -o FORMAT obey FORMAT while constructing output line\n\ -t CHAR use CHAR as input and output field separator\n\ -v SIDE like -a SIDE, but suppress joined output lines\n\ --help display this help and exit\n\ --version output version information and exit\n\ \n\ When FILE1 or FILE2 is -, not both, read standard input. SIDE is 1\n\ for FILE1 or 2 for FILE2. Unless -t CHAR is given, leading blanks\n\ separate fields and are ignored, else fields are separated by CHAR.\n\ Any FIELD is a field number counted from 1. FORMAT is one or more\n\ comma or blank separated specifications, each being `SIDE.FIELD'.\n\ Default FORMAT outputs the join field, the remaining fields from\n\ FILE1, the remaining fields from FILE2, all separated by CHAR.\n\ "); } exit (status); }